Big Data in Immunology Workshop (pre-meeting workshop, separate registration required)

Tuesday, June 21, 2022

7:30 AM – 12:00 PM PT

Location: Salons 5/6

Chair(s)

SB

Sanchita Bhattacharya, Other

Bioinformatics Project Leader
University of California San Francisco
San Francisco, California, United States

Speaker(s)

PA

Prabhu Arunachalam
TO

Tomiko Oskotsky
SF

Slim Fourati
OH

Oliver He
AB

Atul J. Butte, M.D., Ph.D.

Director
University of California San Francisco
San Francisco, California, United States
Zicheng Hu, PhD

Researcher
University of California at San Francisco
San Francisco, California, United States
KH

Kate Hypes
ZT

Zullinel Trilla-Flores

Program
Session I: Invited Talks
7:30 – 8:00 am Continental Breakfast
8:00 – 8:10 am Introductory Remarks – Sanchita Bhattacharya University of California – San Francisco & Atul Butte, University of California – San Francisco
8:10 – 8:35 am Human Immunity to SARS-CoV-2 Infection and Vaccination – Prabhu Arunachalam, Stanford University
8:35-9:00 am March of Dimes Biorepository for Preterm Birth Research – Tomiko Oskotsky, University of California, San Francisco
9:00 – 9:10 am Break
9:10-9:35 am Pan-Vaccine Analysis Reveals Innate Immune Endotypes Predictive of Antibody Responses to Vaccination – Slim Fourati, Emory University School of Medicine
9:35-10:00 am Ontology Supported Integrative Analysis and Visualization of Vaccine-Induced Pathways and Networks – Yongqun “Oliver” He, University of Michigan Medical School
10:00 – 10:25 am Deep Learning Applications with Cytometry Data – Zicheng Hu, Genentech
10:25-10:45 am Break

Session II: Hands-on-Training with ImmPort Data
Organized by ImmPort Team (Zicheng Hu, Henry Schaefer, Kate Hypes, Zullinel Trilla-Flores, Sanchita Bhattacharya)
10:45-10:55 am ImmPort: An Overview
11:00 am-12:00 pm Hands-on Exercise: Explore, Extract, and Analyze Clinical and Immunological Assay Data from ImmPort
12:00 pm Adjourn

Learning Objectives:

Describe open-access clinical trial initiatives.
Access publicly available clinical trial data and research datasets in the ImmPort database.
Discuss data reuse, reproducibility, and reanalysis of an open-access clinical trial and immunology research datasets and bioinformatics tools for analyses.
Engage in a hands-on tutorial on preliminary data analyses of an ImmPort study.