Autoimmune Diseases
S. Alice Long, PhD
Associate Member
Benaroya Research Institute
Seattle, Washington, United States
Britta E. Jones, PhD
Postdoctoral Fellow
Benaroya Research Institute
Seattle, Washington, United States
Valerie Z. Wall, PhD
Benaroya Research.Institute
Seattle, Wyoming, United States
Virginia Muir, PhD
Systems Immunology Division
Benaroya Research Institute
Seattle, Washington, United States
Alyssa Ylescupidez, MS
Benaroya Research Institute
Seattle, Washington, United States
Katharina Lambert, PhD
Postdoctoral Researcher
Benaroya Research Institute
Seattle, Washington, United States
Stephan Pribitzer, PhD
Benaroya Research Institute
Seattle, Washington, United States
Hannes Uchtenhagen, PhD
Benaroya Research Institute
Seattle, Washington, United States
Cate Speake, PhD
Research Assistant Member
Benaroya Research Institute
Seattle, Washington, United States
Alexander Heubreck, MS
Allen Institute
Seattle, Washington, United States
Troy Torgerson, MD, PhD
Allen Institute
Seattle, Washington, United States
Adam Savage, PhD
Scientist
Allen Institute
Seattle, Washington, United States
Michael Maldonado, MD
Bristol Myers Squibb
Philadelphia, Pennsylvania, United States
Neelanjana Ray, PhD
Bristol Myers Squibb
Princton, New Jersey, United States
Vadim Khaychuk, PhD
Bristol Myers Squibb
Revere, Massachusetts, United States
Jinqi Liu, PhD
Bristol Myers Squibb
Princeton, New Jersey, United States
Peter S. Linsley, PhD
Systems Immunology Division
Benaroya Research Institute
Seattle, Washington, United States
Jane H. Buckner, MD
President, BRI
Benaroya Research Institute
Seattle, Washington, United States
Exhausted CD8 T cells (TEX) are associated with worse outcome in cancer yet better outcome in autoimmunity. However, factors contributing to reduced TEX in autoimmunity are not well understood. Here, we identify co-expression of TIGIT and KLRG1 as identifiers of human TEX. TIGIT+KLRG1+ CD8 memory T cells share EOMES signature genes in healthy controls (HC), type 1 diabetes, and rheumatoid arthritis (RA) subjects; are increased with age and in chronic viral-specific cells; and are hyporesponsive (reduced proliferation and cytokine production) in vitro. We applied this inclusive measure of TEX to larger longitudinal and autoimmune cohorts. Consistent with a genetic determinant, TEX are stable within HC (within-individual mean range in frequency 6.5% (95% CI: 5.6-7.4%)) but vary between individuals (inter-individual mean frequency 4.2-59.8%) resulting in a high intraclass correlation coefficient of 92.0%. In a large cohort of HC and RA subjects (n >90/cohort), lower levels of EOMES transcriptional modules and TEX cells were associated with RA-associated HLA risk alleles (primarily DR4), regardless of disease status. In a treatment cohort, an increase in TEX following treatment was more prevalent in RA HLA risk subjects (11/16, 69%, p=0.0043) than non-risk subjects (4/10, 40%,p= ns) treated with abatacept; no change in TEX was observed with adalimumab (anti-TNF). The HLA association and selective modulation with abatacept suggests that TEX may be indirectly influenced by APC or T cell help, that is blocked by abatacept. Moreover, targeting factors that increase TEX may be more effective in HLA risk subjects, a step towards personalized medicine.