Fluorine is increasingly being incorporated into pharmaceuticals to modulate their physical properties. Furthermore, 18F can be utilized in positron emission tomography (PET) probes for in vivo imaging. Bavarostat is a selective inhibitor of histone deacetylase 6 (HDAC6), and when derivatized with 18F is used to map out HDAC6 localisation within the brain. As HDAC6 is implicated in Alzheimer’s disease due to its function as a Tau deacetylase, it may serve as an effective biomarker for this disease. The active site cavity of HDAC6 contains two phenylalanine residues that form an aromatic crevice, F583 and F643, that engage in offset π-π interactions with phenylhydroxymate binding groups. Moreover, the fluoroaromatic ring of Bavarostat orientates such that the C–F group binds in the aromatic crevice instead of being exposed to solvent. Structure activity relationships were determined for a series of fluorophenylhydroxymates to inform the design of fluorinated inhibitors of HDAC6 as well PET probes. Our studies show the aromatic crevice of HDAC6 preferentially binds C–F groups in this series of inhibitors. The inhibitors show differences in zinc binding orientations, likely due to the electronic influence of fluorine on the hydroxymate zinc-binding group.
This research was supported by NIH grant GM49758 This research is based upon research conducted at the Northeastern Collaborative Access Team beamlines, which are funded by the National Institute of General Medical Sciences of the NIH (P30 GM124165). The Eiger 16M detector on the 24-ID-E beam line is funded by an NIH-ORIP HEI grant (S10OD021527). This research utilized resources of the Advanced Photon Source, a U.S. Department of Energy (DOE) Office of Science User Facility operated for the DOE Office of Science by Argonne National Laboratory under Contract No. DE-AC02-06CH11357.
